Hüseyin KAYA - Scientific Publications

    Refereed journal articles, reviews, and book chapters:



  • H. Kaya, Z. Liu, and H.S. Chan (2005). ``Chevron Behavior and Isostable Enthalpic Barriers in Protein Folding: Successes and Limitations of Simple Go-like Modelling'', Biophysical Journal, accepted for publication.

  • H. Kaya and H.S. Chan (2005). ``An Explicit-Chain Model of Native-State Hydrogen Exchange: Implication for Event Ordering and Cooperativity in Protein Folding'', Proteins: Structure, Function, and Bioinformatics, 58, 31-44 [ Download PDF file].

  • J.E. Ollerenshaw, H. Kaya, H.S. Chan, and L.E. Kay (2004). ``Sparsely-Populated Folding Intermediates of the Fyn SH3 Domain: Matching Native-Centric Essential Dynamics and Experiment'', Proceedings of the National Academy of Sciences, USA, 101, 14748-14753 [ Download PDF file].

  • H.S. Chan, S. Shimizu, and H. Kaya (2004). ``Cooperativity Principles in Protein Folding'', Methods in Enzymology, 380, 350-379 [ Download PDF file].

  • M. Knott, H. Kaya, and H.S. Chan (2004). ``Energetics of Protein Thermodynamic Cooperativity: Contributions of Local and Nonlocal Interactions'', Polymer, 54, 623-632. [ Download PDF file]

  • H. Kaya and H.S. Chan (2003). ``Simple Two-State Protein Folding Kinetics Requires Near-Levinthal Thermodynamic Cooperativity'', Proteins: Structure, Function, and Genetics, 52, 510-523. [ Download PDF file]

  • H. Kaya and H.S. Chan (2003). ``Contact Order Dependant Protein Folding Rates: Kinetic Consequences of a Cooperative Interplay Between Favorable Nonlocal Interactions and Local Conformational Preferences'', Proteins: Structure, Function, and Genetics, 52, 524-533. [ Download PDF file]

  • H. Kaya and H.S. Chan (2003). ``Origins of Chevron Rollovers in Non-Two-State Protein Folding Kinetics'', Physical Review Letters, 90, 258104. [ Download PDF file]

  • H. Kaya and H.S. Chan (2003). ``Solvation Effects and Driving Forces for Protein Thermodynamics and Kinetic Cooperativity: How Adequate is Native-Centric Topological Modelling?'', Journal of Molecular Biology, 326, 911-931. [ Download PDF file]

  • A. Erzan, H. Kaya, and A. Kabakçıoğlu (2003). ``Scaling Behaviour of a Multiply Connected Fluctuating Interface in Two Dimensions'', Fractals, 11, 227-232.

  • H. Kaya and H.S. Chan (2002). ``Towards A Consistent Modeling of Protein Thermodynamic and Kinetic Cooperativity: How Applicable is The Transition State Picture?'', Journal of Molecular Biology, 315, 899-909. [ Download PDF file]

  • H.S. Chan, H. Kaya, and S. Shimizu (2002). ``Computational Methods for Protein Folding: Scaling a Hierarchy of Complexities''. In: Current Topics in Computational Molecular Biology, edited by T. Jiang, Y. Xu & M.Q. Zhang. (The MIT Press, Cambridge, Massachusetts, U.S.A.), Chapter 16, pp 403-447.

  • H. Kaya and H.S. Chan (2000). ``Energetic Components of Cooperative Protein Folding''. Physical Review Letters, 85, 4823-4826. [Download postscript file, PDF file]

  • H. Kaya and H.S. Chan (2000). ``Polymer Principles of Protein Calorimetric Two-State Cooperativity''. Proteins: Structure, Function, and Genetics 40, 637-661. [Download postscript file, PDF file.] Erratum: 43, 523 (2001).

  • H. Kaya and A.N. Berker (2000). ``Multiplicity of Ordered Phases in Frustrated Systems Obtained from Hard-Spin Mean-Field Theory''. Physical Review E 62, R1469-R1472. [Download postscript file, PDF file.]

  • H. Kaya, A. Kabakçıoğlu, and A. Erzan (2000). ``Delocalization Transition of a Rough Adsorption-Reaction Interface''. Physical Review E 61, 1102-1105. [Download postscript file, PDF file.]

  • H. Kaya and A. Erzan (1999). ``Novel Position-Space Renormalization for Bond Directed Percolation in Two Dimensions''. Physica A 265, 53-61. [Download postscript file, PDF file.]

  • N.L. Shatashvili, J.I. Javakhishvili, and H. Kaya (1997). ``Non-Linear Wave Dynamics in Two Temperatures Hot Electron-Positron-Ion Plasma''. Astrophysics and Space Science 250, 109-115. [Download PDF file.]

  • H. Kaya and A. Erzan (1994). ``Reactant Clustering in Heterogeneous Catalysis with Surface Diffusion''. Surface Science 320, 185-190. [Download PDF file.]

  • H. Kaya, F. Kadırgan, and A. Erzan (1993). ``Universality of Surface Catalysis with Diffusion''. Journal of Chemical Physics 98, 9030-9033. [Download postscript file, PDF file.]

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