1. Berezovskii, I.N. & Tumanyan, V.G.
            Objective method for isolating the domains of globular proteins.
                        Biophysics 40, 1181-1187 (1995)

1997

2. Berezovsky, I.N., Kilosanidze, G.T., Tumanyan, V.G. & Kisselev, L.
            COOH-decamers in proteins are non-random.
                        FEBS Letters  404, 140-142 (1997) PDF

3. Berezovskii, I.N., Esipova, N.G. & Tumanyan, V.G.
            Isolation of the energy-significant parts of the globule and the
            hierarchy of the   domain structure of the protein macromolecule.
                        Biophysics 42,  557-565 (1997)

4. Berezovsky, I.N., Tumanyan, V.G. & Esipova, N.G.
            Representation of amino acid sequence in terms of interaction
            energy in protein globule.
                        FEBS Letters 418, 43-46 (1997) PDF

1998

5. Berezovskii, I.N., Esipova, N.G. & Tumanyan, V.G.
            Spatial distribution of directed interactions in globular protein structures.
                        Biophysics 43, 367-377 (1998) PDF

6. Berezovskii, I.N., Esipova, N.G., Tumanyan, V.G. & Namiot, V.A.
           A new approach to calculating of van der Waals interaction energies
          in protein macromolecules. Dielectric constant as a physical parameter.
                       Biophysics 43, 909-916 (1998) PDF

1999

7. Berezovsky, I.N., Kilosanidze, G.T., Tumanyan, V.G. & Kisselev, L.L.
           Amino acid composition of protein termini are biased in different manner.
                         Protein Engineering 12, 23-30 (1999) PDF

8. Berezovsky, I.N., Namiot, V.A., Tumanyan, V.G. & Esipova, N.G.
           Hierarchy of the interaction energy distribution in the spatial structure
           of globular proteins and the problem of domain definition.
                       J. Biomol. Struct. Dyn. 17, 133-155 (1999) PDF

2000

9. Berezovsky, I.N., Grosberg, A.Y. & Trifonov, E.N.
           Closed loops of nearly standard size: common basic element of protein structure.
                       FEBS Letters 466, 283-286 (2000) PDF

10. Berezovsky, I.N., Esipova, N.G., Tumanyan, V.G. & Namiot, V.A.
             A new approach for the calculation of the energy of van der Waals
             interactions in macromolecules of globular proteins.
                         J. Biomol. Struct. Dyn. 17, 799-809 (2000) PDF

11. Berezovsky, I.N., Esipova, N.G. & Tumanyan, V.G.
             Hierarchy of regions of amino acid sequence in aspect of their
             role in the protein spatial structure.
                         J. Comp. Biol. 7, 183-192 (2000) PDF

2001

12. Berezovsky, I.N. & Trifonov, E.N.
             Evolutionary aspects of protein structure and folding.
                      Mol. Biol. 35, 233-239 (2001) PDF

13. Berezovsky, I.N. & Trifonov, E.N.
             Van der Waals locks: loop-n-lock structure of globular proteins.
                      J. Mol. Biol. 307, 1419-1426 (2001) PDF

14. Lamarine, M., Mornon, J.-P., Berezovsky I.N. & Chomilier, J.
             Distribution of tightened end fragments of globular proteins statistically
             match that of topohydrophobic positions: towards an efficient punctuation of protein folding?
                     Cell. Mol. Life Sci. 58, 492-498 (2001) PDF

15. Berezovsky, I.N. & Trifonov, E.N.
             Loop fold nature of globular proteins.
                     Protein Engineering 14, 403-407 (2001) PDF

16. Trifonov, E.N., Kirzhner, A., Kirzhner, V.M. & Berezovsky, I.N.
             Distinct stages of protein evolution as suggested by protein sequence analysis.
                     J. Mol. Evol. 53, 394-401 (2001) PDF

17. Berezovsky, I.N., Kirzhner, A., Kirzhner, V.M. & Trifonov, E.N.
             Protein folding: looping from the hydrophobic nuclei.
                       PROTEINS: Structure, Function, and Genetics 45, 346-350(2001)
                      PDF

18. Berezovsky, I.N. & Trifonov, E.N.
             Protein structure and folding: a new start.
                       J. Biomol. Struct. & Dyn. 19, 397-403 (2001) PDF

19. Fain, A.V., Berezovskii, I.N., Tchehov, V.O., Ukrainskii, D.L. & Esipova N.G.
              Double and bifurkated bonds in alpha-helices of globular proteins.
                       Biophysics 46, 921-928 (2001) PDF1, PDF2, PDF3

2002

20. Trifonov, E.N. & Berezovsky, I.N.
             Proteomic code.
                     Mol. Biol. 36, 239-243 (2002) PDF

21. Berezovsky, I.N.
             Protein structure: chapters which have been missed.
                      In: Recent Research Developments
                      in Protein Folding, Stability and Design.
                       (Eds. M.M. Gromiha and S. Selvaraj) vol.1, pp.1-23
                      Transworld Research Network, Trivandrum, India (2002) PDF

22. Berezovsky, I.N. & Trifonov, E.N.
             Loop fold structure of proteins: resolution of Levinthal's paradox.
                       J. Biomol. Struct. & Dyn. 20, 5-6 (2002) PDF

23. Trifonov, E.N. & Berezovsky, I.N.
             Molecular evolution from abiotic scratch.
                       FEBS Letters 527, 1-4 (2002) PDF
 

24. Berezovsky, I.N. & Trifonov, E.N.
             Back to units of protein folding.
                       J. Biomol. Struct. & Dyn. 20, 315-316 (2002) PDF
Link contains all Opinion Pieces on Levinthal paradox and protein folding
published in the issue
 

25. Berezovsky, I.N. & Trifonov, E.N.
             Flowering buds of globular proteins: transpiring simplicity of protein organization.
                       Comparative and functional genomics 3, 525-534 (2002) PDF
 

26. Berezovsky, I.N., Kirzhner, V.M., Kirzhner, A., Rosenfeld V.R. & Trifonov, E.N.
             Closed loops: persistence of the protein chain returns.
                       Protein Engineering 15, 955-957 (2002) PDF
 

2003

27. Berezovsky, I.N., Kirzhner, A., Kirzhner, V.M. & Trifonov, E.N.
             An eye-opener to protein structure.
                       ComPlexUs 1, 29-37 (2003) PDF
 

28. Trifonov, E.N. & Berezovsky, I.N.
             Evolutionary aspects of protein strcuture and folding.
                       Curr. Opin. Struct. Biol. 13, 110-114 (2003) PDF
 

29. Berezovsky, I.N.
             Discrete structure of van der Waals domains in globular proteins.
                       Protein Engineering 16, 161-167 (2003) PDF
 

30. Berezovsky, I.N., Kirzhner, A., Kirzhner, V.M., Rosenfeld V.R. & Trifonov, E.N.
             Protein sequnces yeild a proteomic code.
                       J. Biomol. Struct. & Dyn. 21, 317-325 (2003) PDF
 

31. Berezovsky, I.N., Kirzhner, A., Kirzhner, V.M. & Trifonov, E.N.
             Spelling protein structure.
                       J. Biomol. Struct. & Dyn. 21, 327-339 (2003) PDF
 

32. Berezovsky, I.N. & Trifonov, E.N.
             Protein structure: marriage with polymer statistics.
                      In: Protein Structures.
                      Kaleidoscope of Structural Properties and Functions.
                       (Ed. V.N. Uversky), vol.1, pp. 1-15.
                      Transworld Research Network, Trivandrum, India (2003) PDF
 

2004

33. Papandreou, N., Berezovsky, I.N., Lopes, A., Eliopoulos, E. & Chomilier, J.
             Universal positions in globular proteins. From observation to simulation.
                      Eur. J. Biochem. 271, 4762-4768 (2004) PDF
 

2005

34. Berezovsky, I.N. & Shakhnovich, E.I.
             Physics and evolution of thermophilic adaptation.
                      Proc. Nat. Acad. Sci. USA 102, 12742-12747 (2005) PDF

35. Berezovsky, I.N., Chen, W.W., Choi, P.J. & Shakhnovich, E.I.
             Entropic stabilization of proteins and its proteomic consequences.
                      PLoS Comp. Biol. 102, e47 (2005).